Category Archives: meetings

3rd Symfonia Grant Meeting

On May 16-17th, 2017 we will have another grant meeting. This time the meeting takes place in Wierzba conference center, and the host institution will be the Nencki Institute of experimental biology.

Preliminary agenda can be downloaded  here.

Participants list:

  • Michał J. Dąbrowski
  • Michał Dramiński
  • Mateusz Garbulowski
  • Jan Komorowski
  • Jacek Koronacki
  • Hanna Kranas
  • Magdalena Machnicka
  • Anna Macioszek
  • Jakub Mieczkowski
  • Magdalena Mozolewska
  • Karolina Sienkiewicz
  • Karolina Stępniak
  • Ewa Szczurek
  • Bartek Wilczyński
  • Bartosz Wojtaś

 

Second Symfonia meeting in Będlewo agenda

Meeting preliminary agenda:

Thursday, October 13th, 2016, Będlewo Conference Center

12:00 – 13:00 Lunch

13:30 – 14:30 Scientific talks
- Opening – B. Wilczynski (5 min)
- Update on DNAse-Seq and  ChIP-Seq method developments and sample processing state – K. Stępniak (15 min)
- Update and status of our NGS sequencing – what data is available now and is planned for the near future – B. Wojtas  (15 min)
- First glimpse into DNAse and RNA-Seq experimental results – B Wilczyński and A. Macioszek (15 min)
- “Maps of regulatory regions – the tfNet tool and results” together with a report on the development of “PiiL – a tool for pathway annotation” – J. Komorowski (15 min)

14:30 – 14:45 Coffee break

14:45 – 16:30 – scientific talks
- TCGA methylation project developments  -  MJ Dąbrowski (supported by M Draminski and B Wojtas) (25 min)
- Mutually exclusive mutations in cancer – D. Matlak (15 min)
- Introduction to M. Mozolewska expertise and its relevance to the project – M. Mozolewska (20 min)
- Statistical analyses of MNase data – Jakub Mieczkowski  (15 min)
- TBA – A. Polański (30 min)

16:30 – 17:30 – Discussion and planning for the upcoming experiments and analyses over coffee

18:00 – 20:00 – Dinner

Meeting participants:
- Michał J. Dąbrowski
- Michał Dramiński
- Mateusz Garbulowski
- Bożena Kamińska
- Jan Komorowski
- Anna Macioszek
- Dariusz Matlak
- Jakub Mieczkowski
- Magdalena Mozolewska
- Andrzej Polański
- Karolina Stępniak
- Karolina Smolińska
- Bartosz Wilczyński
- Bartosz Wojtaś

Symfonia grant meeting

Today we have a meeting of the Symfonia grant on An atlas of brain regulatory regions and regulatory networks – a novel systems biology approach to pathogenesis of selected neurological disorder. 

The meeting takes place at the Faculty of Mathematics, Informatics and Mechanics of University of Warsaw (Banacha 2, room 2180). The agenda is as follows:

10:45-11:15 – Coffee
11:00-11:15 – Introductory remarks – Bartek Wilczyński

11:15-12:15 – First session
11:15-11:30 – Karolina Stępniak – Methods to study open chromatin and epigenetics
11:30-12:15 – Bartosz Wojtaś, Michał J. Dąbrowski and Michał Dramiński
- DNA methylation studies

12:15-13:15 – lunch (room 4770)

13:15-14:15 – Second session
13:15-13:35 – Mateusz Garbulowski and Jan Komorowski -  Visunet and
preliminary interaction analysis of the problem presented by the trio
above.
13:35-13:55 – Andrzej Polanski  – Coalescence modeling of tumor growth
and estimating age of driver mutations
13:55-14:15 – Jan Komorowski – Combinatorial identification of DNA
methylation patterns over age in the human brain

14:15- 14:45 Coffee

14:45 – 15:45 – Third session
14:45 – 15:15 – Bartek Wilczyński  – Research plans for the MIMUW group
15:15 – 15:45 – Ewa Szczurek – Predicting synthetic lethality in
cancer from tumor genomic data

15:45 – 16:45 – Open discussion